| BLAST | Fast local similarity search tool for protein sequence databases. |
| Clustal Omega | Multiple sequence alignment of DNA or protein sequences. Clustal Omega replaces the older ClustalW alignment tools. |
| DeepView | Program for viewing and studying protein structure. |
| ExPASy | SIB Bioinformatics Resource Portal. |
| Modeller | For homology or comparative modeling of protein three-dimensional structures. |
| Protein Data Bank in Europe | The European resource for the collection, organisation and dissemination of 3D structural data (from PDB and EMDB) on biological macromolecules and their complexes. |
| UniProt | Comprehensive resource for protein sequence and functional annotation data. |
| Zinc Finger Tools | Design a Zinc Finger Protein |
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