Molecular Medicine Israel

Engineered Biomarkers Could ID Cancer Cells

Scientists develop synthetic blood-based biomarkers to amplify tumor signals in a mouse model.

Delivering DNA that results in the production of a tumor cell-specific reporter protein detectable in the blood could be a new method for earlier tumor identification, according to a proof-of-concept study published today (February 23) in PNAS.

“Conceptually, this is transformative. There are many studies that put . . . gene-delivery systems into cancer cells and try to kill the cancer cells,” saidShuk-Mei Ho of the University of Cincinnati, who was not involved in the study. “[Instead] we might be able to do a lot of things to kill the cancer cells, including radiation or surgery, if we detect them early enough.”

Tumor cells generally release so few cancer-specific biomarker molecules into the bloodstream that these markers cannot be reliably used early disease detection. To circumvent this problem, Sanjiv “Sam” Gambhir and his colleagues at Stanford University designed injectable tumor-detecting DNA “minicircles.” Minicircles are similar to but smaller than bacterial plasmids and lack prokaryotic features such as antibiotic-resistance genes, thus minimizing risk of a negative immune response. The minicircle’s reporter gene encodes a human protein that is not otherwise expressed in adult tissues, secreted embryonic alkaline phosphatase (SEAP), under the control of a general tumor-specific promoter, Survivin. Only tumor cells should produce the secretable biomarker. When the researchers injected these minicircles into tumor-bearing mice, they detected SEAP in the blood from three days to two weeks after injection, at levels that could be distinguished from non-tumor-bearing mice nearly 92 percent of the time.

“It’s unconventional . . . that they tried to use an engineered biomarker,” said Andrei Drabovich of the University Toronto who was not involved in the study. He raised concerns about the reported rate of false-positives, since low amounts of SEAP were also produced in mice without tumors. “It’s probably not ready yet for screening applications in the general population, but you can definitely find some niche when it comes to cancer patients or suspected cancer patients,” Drabovich said.

“I wouldn’t say that it would be so safe and with no concerns that we could apply it to everybody, but it does open up opportunities to screen high-risk patients,” agreed Ho.

“The system sounds nice and it is quite interesting, there is no question about it, but the claims in the paper go far beyond what is actually demonstrated in my eyes,” said Harald Mischak of the University of Glasgow who was not involved in the research. “I see no value in a general tumor marker. It would just produce a lot of anxiety in the patients, and is of no help if you don’t know where the tumor is,” added Mischak—particularly if the tumor is too small to be clinically relevant.

Gambhir countered that the current system is not powerful enough to be concerned about detecting insignificant tumors. “We think we can get down into the cubic millimeter range, which is still millions of cells, but we don’t think we could detect one or 10 or 100 or 1,000 cells sitting somewhere in your body. So sensitivity is probably a bigger problem than specificity,” he said, adding: “The problem is more [that] when you don’t see SEAP in the blood, [it] doesn’t mean there isn’t a tumor.”

Ho, on the other hand, said the sensitivity appeared quite good but that specificity could be an issue due to a “leaky” or poorly regulated promoter. But both the promoter and the reporter genes could be switched out for different purposes, Gambhir pointed out. “The system was designed to be fairly modular so that you could take minicircles and disrupt [them] in different ways and still get signal in the way you would desire,” he said.

Gambhir and his colleagues are now investigating the use of less leaky or more organ-specific promoters, as well as reporters that could also be used to image the tumor or be expelled in urine or breath for easier detection. The researchers are also designing an oral delivery system for the minicircles to address concerns like those voiced by Drabovich that systemic injection or transfection could be toxic for human patients.

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